preview.biohackrxiv.org
Online PDF Generator for BioHackrXiv, an OSF preprint server for BioHackathon-like events in Life Sciences — 9 events and 18 publications by 167 authors
BioHackrXiv list of papers
Papers for Virtual CMU BioHackathon on Clinical Reporting of MultiOmics Data
SnpReportR: A Tool for Clinical Reporting of RNAseq Expression and Variants — by Ahmad Al Khleifat, Jenny Leopoldina Smith, Brandon M. Blobner, Sierra D. Miller, Kymberleigh Pagel, Annie Nadkarni, Melanie Gainey, Patrick Campbell, Olaitan I. Awe, Manuel Belmadani, Alan M. Cleary, Nicholas P. Cooley, Shamika Dhuri, Virginie Grosboillot, Brian Haas, Samuel Hokin, Ekaterina Orlova, Meghana Pagadala, Stephen Price, Adelaide Rhodes, Janice Kyla Nascimento Smith, Chaitanya Srinivasan, Barry Zorman, Ben Busby (2021-06-29)
Papers for BioHackathon Europe 2020 Online
Progress on Data Stewardship Wizard during BioHackathon Europe 2020 — by Marek Suchánek, Rob Hooft, Konogan Bourhy (2020-12-06)
Linking PubDictionaries with UniBioDicts to support Community Curation — by John Zobolas, Jin-Dong Kim, Martin Kuiper, Steven Vercruysse (2020-12-25)
Connecting molecular sequences to their voucher specimens — by Quentin Groom, Mathias Dillen, Pieter Huybrechts, Rukaya Johaadien, Niki Kyriakopoulou, Francisco Quevedo, Maarten Trekels, Wai Yee Wong (2021-03-03)
SB4ER: an ELIXIR Service Bundle for Epidemic Response — by Castrense Savojardo, Pier Luigi Martelli, Giulia Babbi, Marco Anteghini, Matteo Manfredi, Giovanni Madeo, Emidio Capriotti, Jumamurat R. Bayjanov, Margherita Mutarelli, Rita Casadio (2021-03-25)
Knowledge graphs and wikidata subsetting — by Jose Emilio Labra Gayo, Ammar Ammar, Dan Brickley, Daniel Fernández Álvarez, Alejandro González Hevia, Alasdair J G Gray, Eric Prud'hommeaux, Denise Slenter, Harold Solbrig, Seyed Amir Hosseini Beghaeiraveri, Benno Fünkfstük, Andra Waagmeester, Egon Willighagen, Liza Ovchinnikova, Guillermo Benjaminsen, Roberto García, Leyla Jael Castro, Daniel Mietchen (2021-04-02)
Exploiting Bioschemas Markup to Populate IDPcentral — by Alasdair Gray, Petros Papadopoulos, Ivan Mičetić, András Hatos (2021-06-22)
Measuring outcomes and impact from the BioHackathon Europe — by Leyla Jael Castro, Corinne Martin, Georgi Lazarov, Dana Cernoskova, Terue Takatsuki, Jennifer Harrow, Dietrich Rebholz-Schuhmann (2021-08-10)
ELIXIR Software Management Plan for Life Sciences — by Renato Alves, Dimitrios Bampalikis, Leyla Jael Castro, José M. Fernández, Jennifer Harrow, Mateusz Kuzak, Eva Martín del Pico, Fotis Psomopoulos, Allegra Via (2021-10-25)
Papers for Virtual BioHackathon Covid-2020
Comparison of SARS-CoV-2 variants with INSaFLU and galaxyproject — by Nazli Sila Kara, Meltem Kutnu, Yasemin Utkueri, Funda Yilmaz, Elif Bozlak, Evrim Fer (2020-05-14)
Global analysis of human SARS-CoV-2 infection and host-virus interaction — by Mariana G. Ferrarini, Vanessa Aguiar-Pulido, Eric T. Dawson, Andrea Guarracino, Andreas Gruber, Lukas Heumos, Alexander Kanitz, Avantika Lal, Brett E. Pickett, Rita Rebollo, Carlos Ruiz-Arenas, Olaitan Awe, Suhana Bedi, Ben Busby, Marielena Georgaki, Chela James, Itziar Martinez Gonzalez, Birgit Meldal, Scheila G. Mucha, Noushin Nabavi, Jakke Neiro, Nuria Queralt Rosinach, Philippe Rocca-Serra, Daniel Siqueira de Oliveira, Maria Tsagiopoulou (2020-05-14)
Determining a novel feature-space for SARS-CoV-2 sequence data — by Francesco Ballesio, Ali Haider Bangash, Didier Barradas-Bautista, Justin Barton, Andrea Guarracino, Lukas Heumos, Aneesh Panoli, Marco Pietrosanto, Anastasios Togkousidis, Phillip Davis, Fotis Psomopoulos (2020-05-14)
Characterization of Potential Drug Treatments for COVID-19 using Twitter — by Ramya Tekumalla, Juan M Banda (2020-06-03)
The COVID-19 epidemiology and monitoring ontology — by Núria Queralt-Rosinach, Paul Schofield, Robert Hoehndorf, Claus Weiland, Erik Schultes, César Henrique Bernabé, Marco Roos (2021-08-11)
Papers for BioHackathon EUROPE, Paris, France, 2019
TogoEx: the integration of gene expression data — by Hidemasa Bono, Takeya Kasukawa (2020-07-13)
Disease and pathway maps for Rare Diseases — by Marek Ostaszewski, Piotr Gawron, David Hoksza, Laura I. Furlong, Janet Pinero, Joaquin Dopazo, Maria Pena Chilet, Marina Esteban, Jose Luis Fernandez, Vincenza Colonna (2020-07-13)
Papers for NBDC/DBCLS BioHackathon, Fukuoka, Japan, 2019
Data validation and schema interoperability — by Leyla Garcia, Jerven Bolleman, Michel Dumontier, Simon Jupp, Jose Emilio Labra Gayo, Thomas Liener, Tazro Ohta, Núria Queralt-Rosinach, Chunlei Wu (2020-04-07)
Logic Programming for the Biomedical Sciences — by Chris Mungall, Hirokazu Chiba, Shuichi Kawashima, Yasunori Yamamoto, Pjotr Prins, Nada Amin, Deepak Unni,